Detailed information of SNP:
|
SNP ID:
sf0113600688(Gbrowse)
Chromosome: chr01 Position: 13600688 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 57.95% | 42.05% |
| All Indica | 771 | 35.41% | 64.59% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 63 | 34.92% | 65.08% |
| Indica I | 357 | 34.45% | 65.55% |
| Indica II | 209 | 28.71% | 71.29% |
| Indica Intermediate | 205 | 43.90% | 56.10% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113600688 | T->C | LOC_Os01g24130(LOC_Os01g24130.1) | Non-Synonymous SNP |