Detailed information of SNP:
|
SNP ID:
sf0113612593(Gbrowse)
Chromosome: chr01 Position: 13612593 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 96.66% | 3.34% |
| All Indica | 768 | 94.40% | 5.60% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 60 | 98.33% | 1.67% |
| Indica I | 362 | 95.86% | 4.14% |
| Indica II | 203 | 91.13% | 8.87% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113612593 | C->T | LOC_Os01g24140(LOC_Os01g24140.1) | Synonymous |