Detailed information of SNP:
|
SNP ID:
sf0113614234(Gbrowse)
Chromosome: chr01 Position: 13614234 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 65.73% | 34.27% |
| All Indica | 783 | 51.21% | 48.79% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 62 | 24.19% | 75.81% |
| Indica I | 369 | 63.96% | 36.04% |
| Indica II | 205 | 29.27% | 70.73% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113614234 | A->G | INTERGENIC | None |