Detailed information of SNP:
|
SNP ID:
sf0113614405(Gbrowse)
Chromosome: chr01 Position: 13614405 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 76.01% | 23.99% |
| All Indica | 745 | 65.64% | 34.36% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 62 | 46.77% | 53.23% |
| Indica I | 351 | 77.78% | 22.22% |
| Indica II | 191 | 48.17% | 51.83% |
| Indica Intermediate | 203 | 61.08% | 38.92% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113614405 | G->A | INTERGENIC | None |