Detailed information of SNP:
|
SNP ID:
sf0113614935(Gbrowse)
Chromosome: chr01 Position: 13614935 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 76.73% | 23.27% |
| All Indica | 749 | 67.29% | 32.71% |
| All Japonica | 494 | 95.55% | 4.45% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 353 | 79.60% | 20.40% |
| Indica II | 195 | 54.36% | 45.64% |
| Indica Intermediate | 201 | 58.21% | 41.79% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113614935 | G->A | INTERGENIC | None |