Detailed information of SNP:
|
SNP ID:
sf0113629212(Gbrowse)
Chromosome: chr01 Position: 13629212 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 91.05% | 8.95% |
| All Indica | 767 | 84.88% | 15.12% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 357 | 78.15% | 21.85% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 201 | 88.06% | 11.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113629212 | A->C | LOC_Os01g24180(LOC_Os01g24180.1) | Non-Synonymous SNP |