Detailed information of SNP:
|
SNP ID:
sf0113668362(Gbrowse)
Chromosome: chr01 Position: 13668362 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 95.40% | 4.60% |
| All Indica | 754 | 92.84% | 7.16% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 347 | 93.37% | 6.63% |
| Indica II | 202 | 93.07% | 6.93% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113668362 | A->G | LOC_Os01g24260(LOC_Os01g24260.1) | Synonymous |