Detailed information of SNP:
|
SNP ID:
sf0113668950(Gbrowse)
Chromosome: chr01 Position: 13668950 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 51.68% | 48.32% |
| All Indica | 759 | 80.76% | 19.24% |
| All Japonica | 491 | 6.31% | 93.69% |
| Aus | 60 | 65.00% | 35.00% |
| Indica I | 355 | 81.97% | 18.03% |
| Indica II | 203 | 81.28% | 18.72% |
| Indica Intermediate | 201 | 78.11% | 21.89% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 90 | 26.67% | 73.33% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113668950 | A->G | LOC_Os01g24260(LOC_Os01g24260.1) | INTRON |