Detailed information of SNP:
|
SNP ID:
sf0113676763(Gbrowse)
Chromosome: chr01 Position: 13676763 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 94.43% | 5.57% |
| All Indica | 781 | 91.68% | 8.32% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 89.65% | 10.35% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 201 | 88.56% | 11.44% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113676763 | G->A | INTERGENIC | None |