Detailed information of SNP:
|
SNP ID:
sf0113677113(Gbrowse)
Chromosome: chr01 Position: 13677113 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1261 | 84.85% | 15.15% |
| All Indica | 667 | 74.81% | 25.19% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 53 | 79.25% | 20.75% |
| Indica I | 318 | 78.62% | 21.38% |
| Indica II | 168 | 72.02% | 27.98% |
| Indica Intermediate | 181 | 70.72% | 29.28% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 33 | 90.91% | 9.09% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113677113 | C->T | INTERGENIC | None |