Detailed information of SNP:
|
SNP ID:
sf0113680471(Gbrowse)
Chromosome: chr01 Position: 13680471 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 53.67% | 46.33% |
| All Indica | 743 | 82.64% | 17.36% |
| All Japonica | 484 | 5.79% | 94.21% |
| Aus | 57 | 75.44% | 24.56% |
| Indica I | 342 | 79.24% | 20.76% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 194 | 81.44% | 18.56% |
| Temperate Japonica | 330 | 2.12% | 97.88% |
| Tropical Japonica | 86 | 23.26% | 76.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113680471 | T->C | INTERGENIC | None |