Detailed information of SNP:
|
SNP ID:
sf0113684867(Gbrowse)
Chromosome: chr01 Position: 13684867 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 71.43% | 28.57% |
| All Indica | 698 | 51.58% | 48.42% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 56 | 73.21% | 26.79% |
| Indica I | 322 | 60.87% | 39.13% |
| Indica II | 186 | 33.87% | 66.13% |
| Indica Intermediate | 190 | 53.16% | 46.84% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113684867 | C->T | LOC_Os01g24294(LOC_Os01g24294.1) | Non-Synonymous SNP |