Detailed information of SNP:
|
SNP ID:
sf0113685861(Gbrowse)
Chromosome: chr01 Position: 13685861 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 50.96% | 49.04% |
| All Indica | 760 | 78.42% | 21.58% |
| All Japonica | 486 | 4.94% | 95.06% |
| Aus | 61 | 68.85% | 31.15% |
| Indica I | 353 | 72.80% | 27.20% |
| Indica II | 205 | 90.73% | 9.27% |
| Indica Intermediate | 202 | 75.74% | 24.26% |
| Temperate Japonica | 331 | 2.42% | 97.58% |
| Tropical Japonica | 88 | 12.50% | 87.50% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113685861 | T->C | LOC_Os01g24294(LOC_Os01g24294.1) | INTRON |