Detailed information of SNP:
|
SNP ID:
sf0113686920(Gbrowse)
Chromosome: chr01 Position: 13686920 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 50.04% | 49.96% |
| All Indica | 765 | 74.25% | 25.75% |
| All Japonica | 489 | 6.75% | 93.25% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 357 | 66.67% | 33.33% |
| Indica II | 204 | 91.67% | 8.33% |
| Indica Intermediate | 204 | 70.10% | 29.90% |
| Temperate Japonica | 332 | 5.12% | 94.88% |
| Tropical Japonica | 91 | 14.29% | 85.71% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113686920 | T->A | LOC_Os01g24294(LOC_Os01g24294.1) | INTRON |