Detailed information of SNP:
|
SNP ID:
sf0113687518(Gbrowse)
Chromosome: chr01 Position: 13687518 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 60.15% | 39.85% |
| All Indica | 737 | 37.99% | 62.01% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 59 | 32.20% | 67.80% |
| Indica I | 334 | 44.91% | 55.09% |
| Indica II | 205 | 28.29% | 71.71% |
| Indica Intermediate | 198 | 36.36% | 63.64% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113687518 | C->T | LOC_Os01g24294(LOC_Os01g24294.1) | Synonymous |