Detailed information of SNP:
|
SNP ID:
sf0113687663(Gbrowse)
Chromosome: chr01 Position: 13687663 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 95.61% | 4.39% |
| All Indica | 772 | 95.08% | 4.92% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 367 | 97.82% | 2.18% |
| Indica II | 202 | 94.06% | 5.94% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113687663 | G->A | LOC_Os01g24294(LOC_Os01g24294.1) | Non-Synonymous SNP |