Detailed information of SNP:
|
SNP ID:
sf0113719167(Gbrowse)
Chromosome: chr01 Position: 13719167 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 52.19% | 47.81% |
| All Indica | 797 | 79.17% | 20.83% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 212 | 43.87% | 56.13% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113719167 | T->C | INTERGENIC | None |