Detailed information of SNP:
|
SNP ID:
sf0113722541(Gbrowse)
Chromosome: chr01 Position: 13722541 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 98.16% | 1.84% |
| All Indica | 794 | 98.74% | 1.26% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113722541 | C->T | INTERGENIC | None |