Detailed information of SNP:
|
SNP ID:
sf0113732083(Gbrowse)
Chromosome: chr01 Position: 13732083 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1359 | 86.39% | 13.61% |
| All Indica | 742 | 76.95% | 23.05% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 352 | 78.69% | 21.31% |
| Indica II | 191 | 78.01% | 21.99% |
| Indica Intermediate | 199 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113732083 | T->C | INTERGENIC | None |