Detailed information of SNP:
|
SNP ID:
sf0113748372(Gbrowse)
Chromosome: chr01 Position: 13748372 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 61.68% | 38.32% |
| All Indica | 751 | 37.68% | 62.32% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 354 | 46.89% | 53.11% |
| Indica II | 199 | 25.13% | 74.87% |
| Indica Intermediate | 198 | 33.84% | 66.16% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113748372 | G->A | INTERGENIC | None |