Detailed information of SNP:
|
SNP ID:
sf0113761393(Gbrowse)
Chromosome: chr01 Position: 13761393 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 81.82% | 18.18% |
| All Indica | 794 | 78.59% | 21.41% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 206 | 74.27% | 25.73% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113761393 | T->A | LOC_Os01g24410(LOC_Os01g24410.1) | Synonymous |