Detailed information of SNP:
|
SNP ID:
sf0113765153(Gbrowse)
Chromosome: chr01 Position: 13765153 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 77.79% | 22.21% |
| All Indica | 768 | 73.44% | 26.56% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 188 | 93.62% | 6.38% |
| Indica Intermediate | 206 | 51.46% | 48.54% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113765153 | G->A | LOC_Os01g24420(LOC_Os01g24420.1) | Non-Synonymous SNP |