Detailed information of SNP:
|
SNP ID:
sf0113766472(Gbrowse)
Chromosome: chr01 Position: 13766472 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 77.21% | 22.79% |
| All Indica | 785 | 72.23% | 27.77% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 372 | 74.19% | 25.81% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 201 | 47.76% | 52.24% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113766472 | G->A | LOC_Os01g24420(LOC_Os01g24420.1) | INTRON |