Detailed information of SNP:
|
SNP ID:
sf0113804787(Gbrowse)
Chromosome: chr01 Position: 13804787 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 79.39% | 20.61% |
| All Indica | 787 | 75.10% | 24.90% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 369 | 72.36% | 27.64% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113804787 | T->C | INTERGENIC | None |