Detailed information of SNP:
|
SNP ID:
sf0113805855(Gbrowse)
Chromosome: chr01 Position: 13805855 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 93.98% | 6.02% |
| All Indica | 779 | 91.01% | 8.99% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 90.08% | 9.92% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 83.25% | 16.75% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113805855 | C->T | INTERGENIC | None |