Detailed information of SNP:
|
SNP ID:
sf0113813402(Gbrowse)
Chromosome: chr01 Position: 13813402 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1247 | 57.34% | 42.66% |
| All Indica | 632 | 33.70% | 66.30% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 244 | 22.13% | 77.87% |
| Indica II | 189 | 65.61% | 34.39% |
| Indica Intermediate | 199 | 17.59% | 82.41% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113813402 | T->C | INTERGENIC | None |