Detailed information of SNP:
|
SNP ID:
sf0113819250(Gbrowse)
Chromosome: chr01 Position: 13819250 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 65.39% | 34.61% |
| All Indica | 787 | 66.58% | 33.42% |
| All Japonica | 497 | 71.83% | 28.17% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 54.81% | 45.19% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 202 | 58.42% | 41.58% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113819250 | A->T | INTERGENIC | None |