Detailed information of SNP:
|
SNP ID:
sf0113846892(Gbrowse)
Chromosome: chr01 Position: 13846892 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 89.76% | 10.24% |
| All Indica | 794 | 92.07% | 7.93% |
| All Japonica | 481 | 99.17% | 0.83% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 323 | 99.69% | 0.31% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113846892 | G->A | INTERGENIC | None |