Detailed information of SNP:
|
SNP ID:
sf0113848005(Gbrowse)
Chromosome: chr01 Position: 13848005 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 81.54% | 18.46% |
| All Indica | 799 | 79.10% | 20.90% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 76.80% | 23.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113848005 | T->C | LOC_Os01g24570(LOC_Os01g24570.1) | Synonymous |