Detailed information of SNP:
|
SNP ID:
sf0113848994(Gbrowse)
Chromosome: chr01 Position: 13848994 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.99% | 46.01% |
| All Indica | 797 | 21.58% | 78.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 22.67% | 77.33% |
| Indica II | 212 | 4.25% | 95.75% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113848994 | A->G | INTERGENIC | None |