Detailed information of SNP:



SNP ID: sf0113875095(Gbrowse)

Chromosome: chr01

Position: 13875095
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1403 94.30% 5.70%
All Indica783 90.29% 9.71%
All Japonica497 99.80% 0.20%
Aus67 98.51% 1.49%
Indica I369 91.33% 8.67%
Indica II209 92.34% 7.66%
Indica Intermediate205 86.34% 13.66%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0113875095 C->T LOC_Os01g24640(LOC_Os01g24640.1) Synonymous