Detailed information of SNP:
|
SNP ID:
sf0113875095(Gbrowse)
Chromosome: chr01 Position: 13875095 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 94.30% | 5.70% |
| All Indica | 783 | 90.29% | 9.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 91.33% | 8.67% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113875095 | C->T | LOC_Os01g24640(LOC_Os01g24640.1) | Synonymous |