Detailed information of SNP:
|
SNP ID:
sf0113903356(Gbrowse)
Chromosome: chr01 Position: 13903356 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.21% | 41.79% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113903356 | C->A | LOC_Os01g24710(LOC_Os01g24710.1) | INTRON |
| sf0113903356 | C->A | LOC_Os01g24710(LOC_Os01g24710.3) | UTR_5_PRIME |
| sf0113903356 | C->A | LOC_Os01g24710(LOC_Os01g24710.2) | UTR_5_PRIME |
| sf0113903356 | C->A | LOC_Os01g24710(LOC_Os01g24710.4) | INTRON |