Detailed information of SNP:
|
SNP ID:
sf0113934211(Gbrowse)
Chromosome: chr01 Position: 13934211 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 53.05% | 46.95% |
| All Indica | 793 | 31.90% | 68.10% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 16.35% | 83.65% |
| Indica II | 210 | 55.71% | 44.29% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113934211 | T->C | LOC_Os01g24764(LOC_Os01g24764.1) | UTR_3_PRIME |