Detailed information of SNP:
|
SNP ID:
sf0113945173(Gbrowse)
Chromosome: chr01 Position: 13945173 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.74% | 33.26% |
| All Indica | 799 | 55.07% | 44.93% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 52.53% | 47.47% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113945173 | T->A | INTERGENIC | None |