Detailed information of SNP:
|
SNP ID:
sf0113969328(Gbrowse)
Chromosome: chr01 Position: 13969328 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 88.29% | 11.71% |
| All Indica | 781 | 82.71% | 17.29% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 371 | 80.59% | 19.41% |
| Indica II | 202 | 92.08% | 7.92% |
| Indica Intermediate | 208 | 77.40% | 22.60% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113969328 | T->G | INTERGENIC | None |