Detailed information of SNP:
|
SNP ID:
sf0113974905(Gbrowse)
Chromosome: chr01 Position: 13974905 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.88% | 49.12% |
| All Indica | 797 | 79.05% | 20.95% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113974905 | G->A | INTERGENIC | None |