Detailed information of SNP:
|
SNP ID:
sf0113975381(Gbrowse)
Chromosome: chr01 Position: 13975381 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 63.27% | 36.73% |
| All Indica | 786 | 95.42% | 4.58% |
| All Japonica | 496 | 7.06% | 92.94% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113975381 | T->C | INTERGENIC | None |