Detailed information of SNP:
|
SNP ID:
sf0113989050(Gbrowse)
Chromosome: chr01 Position: 13989050 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1206 | 91.38% | 8.62% |
| All Indica | 795 | 98.62% | 1.38% |
| All Japonica | 289 | 68.17% | 31.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 178 | 52.81% | 47.19% |
| Tropical Japonica | 67 | 98.51% | 1.49% |
| Japonica Intermediate | 44 | 84.09% | 15.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0113989050 | T->C | INTERGENIC | None |