Detailed information of SNP:
|
SNP ID:
sf0114023146(Gbrowse)
Chromosome: chr01 Position: 14023146 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 82.31% | 17.69% |
| All Indica | 784 | 73.72% | 26.28% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 368 | 73.64% | 26.36% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 205 | 53.66% | 46.34% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114023146 | C->A | INTERGENIC | None |