Detailed information of SNP:
|
SNP ID:
sf0114025272(Gbrowse)
Chromosome: chr01 Position: 14025272 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 91.61% | 8.39% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114025272 | C->T | LOC_Os01g24900(LOC_Os01g24900.1) | Non-Synonymous SNP |