Detailed information of SNP:
|
SNP ID:
sf0114038845(Gbrowse)
Chromosome: chr01 Position: 14038845 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 94.95% | 5.05% |
| All Indica | 787 | 92.88% | 7.12% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 89.62% | 10.38% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114038845 | A->G | INTERGENIC | None |