Detailed information of SNP:
|
SNP ID:
sf0114040345(Gbrowse)
Chromosome: chr01 Position: 14040345 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 60.16% | 39.84% |
| All Indica | 798 | 43.73% | 56.27% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 56.42% | 43.58% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114040345 | T->C | INTERGENIC | None |