Detailed information of SNP:
|
SNP ID:
sf0114064981(Gbrowse)
Chromosome: chr01 Position: 14064981 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 77.59% | 22.41% |
| All Indica | 799 | 70.21% | 29.79% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114064981 | T->C | INTERGENIC | None |