Detailed information of SNP:
|
SNP ID:
sf0114072768(Gbrowse)
Chromosome: chr01 Position: 14072768 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1215 | 88.40% | 11.60% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 298 | 55.70% | 44.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 187 | 32.09% | 67.91% |
| Tropical Japonica | 59 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 90.38% | 9.62% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114072768 | T->C | INTERGENIC | None |