Detailed information of SNP:
|
SNP ID:
sf0114088906(Gbrowse)
Chromosome: chr01 Position: 14088906 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1242 | 85.10% | 14.90% |
| All Indica | 773 | 98.58% | 1.42% |
| All Japonica | 351 | 52.14% | 47.86% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 359 | 99.16% | 0.84% |
| Indica II | 206 | 98.54% | 1.46% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 231 | 30.74% | 69.26% |
| Tropical Japonica | 72 | 100.00% | 0.00% |
| Japonica Intermediate | 48 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114088906 | A->G | INTERGENIC | None |