Detailed information of SNP:
|
SNP ID:
sf0114096899(Gbrowse)
Chromosome: chr01 Position: 14096899 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 59.39% | 40.61% |
| All Indica | 771 | 93.77% | 6.23% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 63 | 69.84% | 30.16% |
| Indica I | 357 | 91.04% | 8.96% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114096899 | A->G | LOC_Os01g25000(LOC_Os01g25000.1) | INTRON |