Detailed information of SNP:
|
SNP ID:
sf0114099578(Gbrowse)
Chromosome: chr01 Position: 14099578 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 76.81% | 23.19% |
| All Indica | 790 | 64.81% | 35.19% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 372 | 66.94% | 33.06% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 206 | 37.38% | 62.62% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114099578 | C->T | INTERGENIC | None |