Detailed information of SNP:
|
SNP ID:
sf0114101672(Gbrowse)
Chromosome: chr01 Position: 14101672 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 71.42% | 28.58% |
| All Indica | 784 | 57.40% | 42.60% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 363 | 39.94% | 60.06% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114101672 | G->C | LOC_Os01g25010(LOC_Os01g25010.1) | Non-Synonymous SNP |