Detailed information of SNP:
|
SNP ID:
sf0114111992(Gbrowse)
Chromosome: chr01 Position: 14111992 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.87% | 15.13% |
| All Indica | 795 | 75.85% | 24.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 372 | 77.96% | 22.04% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114111992 | C->T | INTERGENIC | None |