Detailed information of SNP:
|
SNP ID:
sf0114115317(Gbrowse)
Chromosome: chr01 Position: 14115317 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.40% | 30.60% |
| All Indica | 796 | 54.40% | 45.60% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 37.27% | 62.73% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0114115317 | T->A | INTERGENIC | None |